Artigos em Conferências internacionais

• Artigos indexados pelo ISI (Web of Science)

  [44]

  P. Evangelista, P. Maia, M. Rocha. Implementing metaheuristic optimization algorithms with JECoLi. In Proc. of the 9th International Conference on Intelligent Systems Design and Applications (ISDA 2009), Pisa, Italy, Nov./Dec. 2009.

  [43]

  O. Rocha, P. Maia, I. Rocha, M. Rocha. OptFerm - A Computational Platform for the Optimization of Fermentation Processes. In Proc. of the European Simulation and Modelling Conference (ESM 2009), Leicester, Oct. 2009.

  [42]

  P. Cortez, C. Lopes, P. Sousa, M. Rocha, M. Rio. Symbiotic Data Mining for Personalized Spam Filtering. In Proc. IEEE/WIC/ACM International Joint Conferences on Web Intelligence and Intelligent Agent Technologies, Milan, Sep. 2009, pp. 149-156, IEEE.

  [41]

  D. Machado, R. Costa, M. Rocha, I. Rocha, B. Tidor, E.C. Ferreira. A critical review on modelling formalisms and simulation tools in Computational Biosystems. In Lecture Notes in Computer Science 5518 (IWPACBB'09), Salamanca, Spain, June 2009, pp. 1063-1070, 2009.

  [40]

  P. Evangelista, I. Rocha, E.C. Ferreira, M. Rocha. A software tool for the simulation and optimization of dynamic metabolic models. In Lecture Notes in Computer Science 5518 (IWPACBB'09), Salamanca, Spain, June 2009, pp. 1071-1078, 2009.

  [39]

  A. Lourenço, S. Carneiro, E.C. Ferreira, R. Carreira, L.M. Rocha, D. Glez-Peña, J.R. Méndez, F. Fdez-Riverola, F. Diaz, I. Rocha, M. Rocha. Biomedical Text Mining Applied To Document Retrieval and Semantic Indexing. In Lecture Notes in Computer Science 5518 (IWPACBB'09), Salamanca, Spain, June 2009, pp. 954-963, 2009.

  [38]

  P. Evangelista, I. Rocha, E.C. Ferreira, M. Rocha Evolutionary Approaches for Strain Optimization using Dynamic Models under a Metabolic Engineering Perspective. In C. Pizzuti, M. Ritchie (eds), Proceedings of the EvoBio 2009, Lecture Notes Computer Science 5483, pp.140-151, Springer, April 2009.

  [37]

  J.P. Pinto, O. Dias, A. Lourenço, S. Carneiro, E.C. Ferreira, I. Rocha, M. Rocha. Data Integration Issues in the Reconstruction of the Genome-scale Metabolic Model of Zymomonas mobillis. Proc. of the 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB'08), pp. 92-101, Series: Advances on Soft Computing, Springer Verlag, Oct. 2008. [ RepositoriUM]

  [36]

  E. Valente, I. Rocha, M. Rocha. Modelling Fed-batch Fermentation Processes: An Approach Based on Artificial Neural Networks. Proc. of the 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB'08), pp. 30-39, Series: Advances on Soft Computing, Springer Verlag, Oct. 2008.

  [35]

  P. Sousa, M. Rocha, P. Cortez, M. Rio. Multiconstrained Optimization of Networks with Multicast and Unicast Traffic. In G. Pavlou, T. Ahmed, and T. Dagiuklas (Eds.) Proc. of the MMNS 2008, Lecture Notes Computer Science 5274, pp.139-150, 2008. [ RepositoriUM]

  [34]

  R. Mendes, A. Lourenço, S. Carneiro, I. Rocha, M. Rocha, E.C. Ferreira. A Framework for the Integrated Analysis of Metabolic and Regulatory Networks In Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, Athens, IEEE Press, October 2008. http://dx.doi.org/10.1109/BIBE.2008.4696727 ]

  [33]

  P. Maia, I. Rocha, E.C. Ferreira, M. Rocha. Evaluating Evolutionary Multiobjective Algorithms for the in silico Optimization of Mutant Strains. In Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, Athens, IEEE Press, October 2008. http://dx.doi.org/10.1109/BIBE.2008.4696733 ]

  [32]

  A. Lourenço, R. Carreira, S. Carneiro, P. Maia, D. Glez-Peña, F. Fdez-Riverola, E.C. Ferreira, I. Rocha, M. Rocha. A Framework for the Development of Biomedical Text Mining Software Tools. In Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, Athens, IEEE Press, October 2008. http://dx.doi.org/10.1109/BIBE.2008.4696707 ]

  [31]

  J.R. Méndez, I. Cid, D. Glez-Pena, M. Rocha, F. Fdez-Riverola A Comparative Impact Study of Attribute Selection Techniques on Naive Bayes Spam Filters. In P. Perner (Ed.), Proc. of Industrial Conference Data Mining 2008. Lecture Notes Artificial Intelligence 5077, pp. 213-227, Springer, June 2008.

  [30]

  M. Rocha, P. Sousa, P. Cortez, M. Rio. An Evolutionary Algorithm for Unicast/ Multicast Traffic Engineering. In Proc. of ICINCO 2008 - International Conference on Informatics in Control, Automation and Robotics, pp. 238-243, INSTICC Press, Funchal, May 2008. [ RepositoriUM]

  [29]

  P. Cortez, M. Rio, P. Sousa, M. Rocha. Forecasting Internet Traffic by Neural Networks Under Univariate and Multivariate Strategies. In K. Madani (Ed.), Proc. 4th Intern. Workshop on Artificial Neural Networks and Intelligent Information Processing (ANNIIP 2008), pp. 61-71, Funchal, Portugal, May, 2008. INSTICC Press, [ RepositoriUM]

  [28]

  M. Rocha, R. Mendes, P. Maia, J. Pinto, I. Rocha, E.C. Ferreira. Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains. In Lecture Notes in Artificial Intelligence, Proc. of the EPIA 2007, pp. 473-484, Springer, Guimaraes, December 2007. [ RepositoriUM]

  [27]

  P. Cortez, M. Rio, P. Sousa, M. Rocha. Topology Aware Internet Traffic Forecasting using Neural Networks. Lecture Notes in Computer Science 4669, Proc. of the ICANN 2007, pp.445-454, Springer, Porto, September 2007. [ RepositoriUM]

  [26]

  M. Rocha, R. Mendes, P. Maia, D. Glez-Pena, F. Fdez-Riverola. A Platform for the Selection of Genes in DNA Microarray Data using Evolutionary Algorithms. In Proceedings of Genetic and Evolutionary Computation Conference (GECCO 2007), London, pp. 415-421, ACM Press, Juy 2007.

  [25]

  P. Sousa, M. Rocha, M. Rio, P. Cortez. Class-based OSPF Traffic Engineering inspired on Evolutionary Computation. In F. Boavida, S. Mascolo, E. Monteiro, and Y. Koucheryavy, eds. 5th International Conference on Wired/Wireless Internet Communications, Coimbra, Portugal, May 2007. Lecture Notes Computer Science, pp. 141-152, Springer-Verlag. [ RepositoriUM]

  [24]

  M. Rocha, P. Sousa, P. Cortez, M. Rio. Evolutionary Computation for Quality of Service Internet Routing Optimization In Lecture Notes in Computer Science 4448, pp. 71-80, EvoWorkshops 2007, Valencia, April 2007. [ RepositoriUM]

  [23]

  M. Rocha, J.P. Pinto , I. Rocha, E.C. Ferreira. Evaluating Evolutionary Algorithms and Differential Evolution for the Online Optimization of Fermentation Processes In Lecture Notes in Computer Science 4447, pp. 236-246, EvoBio 2007, Valencia, April 2007. [ RepositoriUM]

  [22]

  M. Rocha, J.P. Pinto, I. Rocha, E.C. Ferreira. Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms. In Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, pp. 331-337, Honolulu, USA, April 2007, IEEE Press. [ RepositoriUM]

  [21]

  P. Sousa, M. Rocha, M. Rio, P. Cortez. Efficient OSPF Weight Allocation for Intra-domain QoS Optimization. In Lecture Notes in Computer Science 4268, Autonomic Principles of IP Operations and Management, pp. 37-48, Springer, October 2006. © Springer-Verlag Springer edition [ RepositoriUM]

  [20]

  P. Cortez, M. Rio, M. Rocha, P. Sousa. Internet Traffic Forecasting using Neural Networks [IEEE edition] [pdf] [ RepositoriUM] In Proceedings of the 2006 IEEE International Joint Conference on Neural Networks, pp. 4942-4949, Vancouver BC, Canada, IEEE Press, July 2006.

  [19]

  M. Rocha, P. Sousa, M. Rio, P. Cortez. QoS Constrained Internet Routing with Evolutionary Algorithms [IEEE edition] [pdf] [ RepositoriUM] In Proceedings of the 2006 IEEE Conference on Evolutionary Computation, pp. 9270-9277, Vancouver BC, Canada, IEEE Press, July 2006.

  [18]

  R. Mendes, M. Rocha, I. Rocha, E.C. Ferreira. A Comparison of Algorithms for the Optimization of Fermentation Processes. [IEEE edition] [pdf] [RepositoriUM]
  In Proceedings of the 2006 IEEE Conference on Evolutionary Computation, pp. 7371-7378, Vancouver BC, Canada, IEEE Press, July 2006.

  [17]

  M. Rocha, I. Rocha, E.C. Ferreira. A New Representation in Evolutionary Algorithms for the Optimization of Bioprocesses. [IEEE edition] [pdf] [RepositoriUM]
  In Proceedings of the 2005 IEEE Conference on Evolutionary Computation, pp.484-490, Edinburgh, IEEE Press, September 2005.

  [16]

  M. Rocha, P. Cortez, J. Neves. Simultaneous Evolution of Neural Network Topologies and Weights for Classification and Regression. © Springer-Verlag [ Springer edition ] [pdf] [ RepositoriUM] [bib]
  In Lecture Notes in Computer Science 3512, Proceedings of the IWANN Conference, Barcelona, pp. 59-66, Springer, June 2005.

  [15]

  M. Rocha, P. Cortez, J. Neves. Evolutionary Design of Neural Networks for Classification and Regression. [pdf] [RepositoriUM]
  In B.Ribeiro, R. Albrecht, A. Dobnikar, D. Pearson, N. Steels (eds), Proceedings of the International Conference on Adaptive and Natural Computing Algorithms (ICANNGA 2005), pp.288-291, Coimbra, SpringerComputerScience, SpringerWienNewYork, 2005.

  [14]

  M. Rocha, J. Neves, A. Veloso, E.C. Ferreira, I. Rocha. Evolutionary Algorithms For Static and Dynamic Optimization of Fed-Batch Fermentation Processes. [pdf]
  [RepositoriUM]
  In B.Ribeiro, R. Albrecht, A. Dobnikar, D. Pearson, N. Steels (eds), Proceedings of the International Conference on Adaptive and Natural Computing Algorithms (ICANNGA 2005), pp.304-307, Coimbra, SpringerComputerScience, SpringerWienNewYork, 2005.

  [13]

  M. Rocha, J. Neves, I. Rocha, E.C. Ferreira. Evolutionary Algorithms for Optimal Control in Fed-batch Fermentation Processes, © Springer-Verlag [Springer edition] [ RepositoriUM]
  In G.Raidl et al. (Eds), Proceedings of the Workshop on Evolutionary Bioinformatics - EvoWorkshops 2004, Lecture Notes Computer Science 3005, pp.84-93, Coimbra, Portugal, Springer, Abril de 2004.

  [12]

  M. Rocha, P. Cortez, J. Neves. Evolutionary Neural Network Learning, © Springer-Verlag [Springer edition] [pdf] [ RepositoriUM] [bib]
  In F. Pires and S. Abreu Eds., Progress in Artificial Intelligence, Proceedings of the 11th Portuguese Conference on Artificial Intelligence (EPIA), Lecture Notes in Artificial Intelligence LNAI 2902, Beja, Portugal, December, 2003, pp. 24-28, 2003, Springer.

  [11]

  R. Mendes, P. Cortez, M. Rocha, J. Neves. Particle Swarms for Feedforward Neural Network Training. [IEEE edition] [pdf] [bib] [RepositoriUM]
  In Proceedings of the 2002 International Joint Conference on Neural Networks (IJCNN 2002), Honolulu, Havai, USA, May, Vol. 2, pp. 1895-1899, 2002, IEEE Computer Society.

  [10]

  M. Rocha, F. Pereira, S. Afonso, J. Neves. A Genetic and Evolutionary Programming Environment with Spatially Structured Populations and Built-In Parallelism. © Springer-Verlag [Springer edition] [pdf] [bib] [ RepositoriUM]
  In Lázló Monostori et al. Eds., Engineering of Intelligent Systems - Proceedings of the Fourteenth International Conference on Industrial & Engineering Applications of Artificial Intelligence & Expert Systems (IEA-AIE'2001), Lecture Notes in Artificial Intelligence 2070, pp. 383-392, Springer, Budapest, Hungary, June 2001.

  [9]

  M. Rocha, P. Cortez, J. Neves. Genetic and Evolutionary Algorithms for Time Series Forecasting, © Springer-Verlag [Springer edition] [pdf] [bib] [ RepositoriUM]
  In Lázló Monostori et al. Eds., Engineering of Intelligent Systems - Proceedings of the Fourteenth International Conference on Industrial & Engineering Applications of Artificial Intelligence & Expert Systems (IEA-AIE'2001), Lecture Notes in Artificial Intelligence 2070, pp. 393-402, Springer, Budapest, Hungary, June 2001.

  [8]

  M. Rocha, R. Mendes, P. Cortez, J. Neves. Sitting Guests at a Wedding Party: Experiments on Genetic and Evolutionary Constrained Optimization. [IEEE edition] [pdf] [bib] [RepositoriUM]
  In Proceedings of the 2001 IEEE Congress on Evolutionary Computation (CEC2001), Seoul, Korea, May, Vol. 1, pp. 671-678, 2001, IEEE Computer Society.

  [7]

  C. Vilela, P. Cortez, M. Rocha, J. Neves, Viewing Scheduling Problems through Genetic and Evolutionary Algorithms. © Springer-Verlag [Springer edition]
  [pdf] [bib] [ RepositoriUM]
  In J. Rolim et al. Eds., Parallel and Distributed Processing, Proc. of the Workshop on Bio-Inspired Solutions to Parallel Processing Problems (BioSP3), IEEE International Symposyum on Parallel and Distributed Systems (ISPDS-2000), Cancun, Mexico, Lecture Notes in Computer Science (LNCS) 1800, pp. 612-619, May 2000, Springer.

  [6]

  M. Rocha, C. Vilela, J. Neves. A Study of Order Based Genetic and Evolutionary Algorithms in Combinatorial Optimization Problems. © Springer-Verlag [Springer Link] [Pre-press (pdf)] [ RepositoriUM]
  In Intelligent Problem Solving, Proceedings of the 13th IEA/AIE-2000, Lecture Notes in Artificial Intelligence 1821, pp. 601-610, Springer, New Orleans, June 2000.

  [5]

  M. Rocha, J. Neves, Preventing Premature Convergence to Local Optima in Genetic Algorithms via Random Offspring Generation. © Springer-Verlag [Springer Link] [Pre-press (pdf)] [ RepositoriUM]
  Multiple Approaches to Intelligent Systems, Proceedings of the 12th IEA/AIE-99, Lecture Notes in Artificial Intelligence 1611, Springer, 1999.

  [4]

  J. Neves, M. Rocha, H. Rodrigues, M. Biscaia, J. Alves. Adaptive Strategies and the Design of Evolutionary Applications. [pdf] [RepositoriUM [bib]
  In Proceedings of the Genetic and Evolutionary Computation Conference (GECCO-99), pp. 473-479, Morgan Kaufmann, July 14-17, Orlando, 1999.

  [3]

  J. Neves, P. Cortez, M. Rocha, A. Abelha, J. Machado, S. Basto, H. Botelho, J. Neves. A Unified Framework for Data Modeling on Medical Information Systems. [pdf] [bib] [RepositoriUM
  In P. Kokol, B. Zupan, J. Stare, M. Premik and R. Engelbrecht Eds., Medical Informatics Europe'99 in Health Technology and Informatics, pp. 68-71, Ljubljana, Slovenia, 1999, IOS press.

  [2]

  C. Vilela, L. Brito, M. Rocha, P. Gonçalves, J. Neves. An Evolutionary and Genetic View of the Job-Shop Scheduling Problem. In Proceedings of the European Simulation Symposium and Exhibition (ESS-99), pp. 465-469, 26-28 October, Erlangen, Germany, 1999, Soc. Computer Simulation.

  [1]

  P. Cortez, M. Rocha, J. Machado, J. Neves. A Neural Network Based Forecasting System. [IEEE edition] [pdf] [RepositoriUM [bib]
  In Proceedings of ICNN'95, 1995 IEEE International Conference on Neural Networks, Perth, Western Australia, November, Vol. 5, pp. 2689-2693, 1995, IEEE Computer Society,

• Outros artigos em conferências internacionais (com peer reviewing e actas com ISBN)

  [17]

  A. Lourenco, H. Costa, S. Carneiro, R. Carreira, M. Rocha, E. Ferreira, I. Rocha. Combining Syntactic and Ontological Knowledge to Extract Biologically Relevant Relations from Scientific Papers. In BioLINK 2009, Special Interest Group of the ISMB/ECCB 2009, Stockholm, Jun.-Jul. 2009. [RepositoriUM]
  

  [16]

  A. Lourenço, S. Carneiro, R. Carreira, M. Rocha, E.C. Ferreira, I. Rocha A Tool for the Automatic and Manual Annotation of Biomedical Documents In Proc. of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, pp. 97-104, September 2008. [RepositoriUM]
  

  [15]

  A. Lourenço, A. Simões, M. Rocha, J. Almeida, I. Rocha, E.C. Ferreira. An Ontology-Based Approach To Systems Biology Literature Retrieval and Processing. In Proceedings of EPIA 2007 - New Trends in Artificial Intelligence, Guimarães, pp.541-552, December 2007. [RepositoriUM]
  

  [14]

  C. Ribeiro, C. Coutinho, M.F.M. Costa, M. Rocha. A Study of Educational Robotics in Elementary Schools. In Proc. of the 4th International Conference on Hands on Science, Development Diversity and Inclusion in Science Education, pp. 76-85, Ponta Delgada, Portugal, July 2007.

  [13]

  R. Mendes, P. Cortez, M. Rocha, J. Neves. An Architecture for Co-evolving Agents in the RoboCup Simulation League. In H. Coelho, B. Espinasse (eds), Proceedings of the 5th Workshop on Agent Based Simulation (ABS 2004), pp.127-132, Lisboa, SCS Europe, Maio de 2004.

  [12]

  M. Rocha, P. Cortez, J. Neves. Ensembles of Artificial Neural Networks of Heterogeneous Topologies. [pdf] [bib] [RepositoriUM]
  In Proceedings of Fourth International Symposium on Engineering of Intelligent Systems (EIS2004), Madeira, Portugal, March, 2004, ICSC Academic Press, ISBN 3-906454-35-5.

  [11]

  M. Rocha, P. Cortez, J. Neves. Evolutionary Neural Network Learning Algorithms for Changing Environments. In Proceedings of the WSEAS Conference on Evolutionary Computation, Udine, Itália, Março de 2004.

  [10]

  C. Tavares Ribeiro, C. Ribeiro, P. Dias, M. Rocha, J. Neves. An Interdisciplinary E-learning System for the K-6, In Proceedings of the IASTED International Conference on Computers and Advanced Technology in Education (CATE-2003), Rhodes, Greece, ACTA Press, pp.67-72, June 2003.

  [9]

  M. Rocha, P. Cortez, J. Neves. Adaptive Learning in Changing Environments. [pdf] [bib] [RepositoriUM]
  In Michel Verleysen Ed., Proceedings of 11th European Symposium on Artificial Neural Networks (ESANN'2003), Bruges, Belgium, April, pp. 487-492, 2003, d-side.

  [8]

  P. Cortez, F. Sollari Allegro, M. Rocha, J. Neves. Real-Time Forecasting by Bio-Inspired Models. [pdf] [bib] [RepositoriUM]
  In M.H. Hamza Ed., Proceedings of the Second IASTED International Conference on Artificial Intelligence and Applications (AIA 2002), Málaga, Spain, September, pp. 52-57, 2002, ACTA Press.

  [7]

  P. Cortez, M. Rocha, J. Neves. A Meta-Genetic Algorithm for Time Series Forecasting. [pdf] [bib] [RepositoriUM]
  In Luís Torgo Ed., Proceedings of Workshop on Artificial Intelligence Techniques for Financial Time Series Analysis (AIFTSA-01), 10th Portuguese Conference on Artificial Intelligence (EPIA'01), Porto, Portugal, December, pp. 21-31, 2001.

  [6]

  M. Rocha, A. Abelha, J. Neves. A Lamarckian Grouping Genetic Algorithm for the Three Matching Problem. In Proceedings of the Eurogen 2001, Athens, Greece, September 2001.

  [5]

  M. Rocha, J. Neves, A. Sousa, J. Mira, S. Almeida, J. Barreto, A. Sousa, C. Ribeiro. Intelligent Tutoring Systems at work in the Teaching of Mathematics. In Proceedings of the International Conference on New Technologies in Science Education (CINTEC'2001), vol. 1, pp. 171-180, Aveiro, Portugal, July 2001.

  [4]

  M. Rocha, P. Cortez, J. Neves. Lamarkian Training of Feedforward Neural Networks. [pdf] [bib] [RepositoriUM]
  In Michel Verleysen Ed., Proceedings of 9th European Symposium on Artificial Neural Networks (ESANN'2001), Bruges, Belgium, April, pp. 153-158, 2001, D-Facto.

  [3]

  M. Rocha, P. Cortez, J. Neves. Evolving Time Series Forecasting Neural Network Model. [pdf] [bib] [RepositoriUM
  In Proceedings of 3rd International Symposium on Adaptive Systems: Evolutionary Computation and Probabilistic Graphical Models (ISAS 2001), Havana, Cuba, March, pp. 84-91, 2001, ICIMAF, ISBN 959-7056-14-3.

  [2]

  M. Rocha, P. Cortez, J. Neves. The Relationship between Learning and Evolution in Static and Dynamic Environments. [pdf] [bib] [RepositoriUM
  In C. Fyfe Ed., Proceedings of Second International Symposium on Engineering of Intelligent Systems (EIS2000), Paisley, Scotland, June, pp. 377-383, 2000, ICSC Academic Press.

  [1]

  P. Cortez, M. Rocha, J. Neves. An Evolutionary and Connectionist Approach for Time Series Forecasting. [pdf] [bib] [RepositoriUM
  In Proceedings of Thirteenth International Conference on Systems Engineering (ICSE 99), Las Vegas, USA, August, pp. 19-24, 1999, INCOSE.

• Posters/resumos em conferências internacionais

  [8]

  I. Rocha, P. Maia, J.P. Pinto, P. Evangelista, J. Nielsen, K.R. Patil, E.C. Ferreira, M. Rocha. OptFlux: a software for metabolic engineering. 17th Annual Intl Conf. Intelligent Systems for Molecular Biology (ISMB) and 8th European Conference Computational Biology (ECCB). June-July 2009, Stockholm, Sweden. [RepositoriUM]
  

  [7]

  P. Maia, I. Rocha, E.C. Ferreira, M. Rocha. Multi-criterion approaches for the in silico optimization of mutant microorganisms. 17th Intl. Conference on Intelligent Systems for Molecular biology (ISMB) and 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden, June/ July 2009. [RepositoriUM]
  

  [6]

  S. Carneiro, A. Lourenço, R. Carreira, M. Rocha, E.C. Ferreira, I. Rocha. Uncovering mechanisms underlying the Escherichia coli stringent response: application of text mining approaches to identify meaningful relations in text documents. Book of Abstracts of the 1st Int. Conf. on Microbial Stress: From Molecules to Systems. May 2009, Semmering, Austria, pp. 127-128. [RepositoriUM]
  

  [5]

  A. Lourenço, S. Carneiro, R. Carreira, M. Rocha, I. Rocha, E.C. Ferreira. Bringing Text Miners and Biologists Closer Together. 3rd International Biocuration Conference, Berlin, 16-19 Abr 2009, Nature Preceedings. [Link]
  

  [4]

  S. Carneiro, A. Lourenço, R. Mendes, M. Rocha, E.C. Ferreira, I. Rocha. An Integrated Analysis of the Metabolic and Regulatory Networks of Escherichia coli K12. Abstract Book of the 9th International Conference on Systems Biology - ICSB 2008, Göteborg, August 2008, DS2-94, p.146. [RepositoriUM]
  

  [3]

  A. Lourenço, R. Carreira, S. Carneiro, P. Maia, E.C. Ferreira, M. Rocha, I. Rocha. The @Note Biomedical Text Mining Workbench. Workshop Systems Biology in Medicine, Barcelona, European Science Foundation, May 8-10, 2008. [RepositoriUM]
  

  [2]

  S. Carneiro, A. Lourenço, R. Mendes, M. Rocha, E.C. Ferreira, I. Rocha. Network analysis of an integrated metabolic/regulatory model of Escherichia coli. Workshop Systems Biology in Medicine, Barcelona, European Science Foundation, May 8-10, 2008. [RepositoriUM]
  

  [1]

  I. Rocha, M. Rocha, E.C. Ferreira, K. Patil, J. Nielsen. An improved evolutionary algorithm-based framework for identifying in silico metabolic engineering targets. Abstract in Metabolic Engineering VI : from recDNA towards Engineering Biological Systems, Leeuwenhorst, Netherlands, 2006, p. 185. [RepositoriUM]
  

• Posters/ resumos em conferências nacionais

  [8]

  P. Vilaça, P. Maia, P. Evangelista, E.C. Ferreira, M. Rocha, I. Rocha. A study on the effects of using gene-reaction rules on in silico strain optimization. Jornadas de Bioinformática 2009, Lisboa, Nov. 2009, pp. 175.

  [7]

  O. Dias, M. Rocha, I. Rocha, E.C. Ferreira. Metabolic reconstruction of less characterized microorganisms: a new methodology for reaction identification from genome sequencing data. Jornadas de Bioinformática 2009, Lisboa, Nov. 2009, pp. 57.

  [6]

  E.C. Ferreira, I. Rocha, L. Rodrigues, L. Kluskens, M. Rocha, A. Lourenço, M. Mota, F. Mergulhão, R. Oliveira. Bridging Systems and Synthetic Biology for the development of improved microbial cell factories. Proc. 1st MIT-Portugal Annual Conference- Engineering for Better Jobs (A.M. Cunha, O.S. Cunha, Eds.), Centro Cultural de Belém, Lisboa, 7 de Julho de 2009, p. 23-24. [RepositoriUM]
  

  [5]

  I. Rocha, P. Maia, M.Rocha, E.C.Ferreira. OptGene - a framework for in silico metabolic engineering. Book of Abstracts of the 10th International Chemical and Biological Engineering Conference - CHEMPOR 2008. E.C. Ferreira and M. Mota (Eds.), Braga, September 2008, pp. 218-219. [RepositoriUM]
  

  [4]

  A. Lourenço, A. Simões, J.J. Almeida, M. Rocha, I. Rocha, E.C. Ferreira. Literature mining applied to systems biology information retrieval. Livro de Actas do Congresso MicroBiotec 07 - XXIII JPG, Lisboa 30.11 - 2.12 2007, p. 171. [RepositoriUM]
  

  [3]

  S. Carneiro, P. Maia, M. Rocha, E.C. Ferreira, I. Rocha. Constraint-based approach for in silico Escherichia coli combined regulatory/metabolic modelling. Livro de Actas do Congresso MicroBiotec 07 - XXIII JPG, Lisboa 30.11 - 2.12 2007, p. 176. [RepositoriUM]
  

  [2]

  M. Rocha, I. Rocha, E.C. Ferreira, A.C. Veloso. Evolutionary algorithms for offline and online optimization of fed-batch fermentation processes. Abstract in: Micro-Biotec 2005 : livro de actas do Congresso MICROBIOTEC 2005, p. 401, Póvoa Varzim, Dezembro 2005. [RepositoriUM]
  

  [1]

  M. Rocha, P. Cortez. Interactions between Learning and Evolution, III Encontro do Forum de Investigadores Portugueses, Faro, Abril de 2001.